J4_8K4E_003
3D structure
- PDB id
- 8K4E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8K4E|1|A|C|576, 8K4E|1|A|A|815, 8K4E|1|A|C|817, 8K4E|1|A|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8K4E_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1089
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8K4E|1|A|G|575
8K4E|1|A|C|576
8K4E|1|A|G|577
*
8K4E|1|A|C|764
8K4E|1|A|G|765
8K4E|1|A|A|766
8K4E|1|A|A|767
8K4E|1|A|A|768
8K4E|1|A|G|769
*
8K4E|1|A|C|810
8K4E|1|A|C|811
8K4E|1|A|G|812
8K4E|1|A|U|813
8K4E|1|A|A|814
8K4E|1|A|A|815
8K4E|1|A|A|816
8K4E|1|A|C|817
8K4E|1|A|G|818
8K4E|1|A|A|819
8K4E|1|A|U|820
8K4E|1|A|G|821
*
8K4E|1|A|C|879
8K4E|1|A|C|880
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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