J4_8K82_007
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8K82|1|C1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8K82_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.076
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C1|C|2192
8K82|1|C1|U|2193
8K82|1|C1|G|2194
*
8K82|1|C1|C|2248
8K82|1|C1|G|2249
*
8K82|1|C1|C|2267
8K82|1|C1|U|2268
8K82|1|C1|U|2269
8K82|1|C1|A|2270
8K82|1|C1|A|2271
8K82|1|C1|G|2272
8K82|1|C1|G|2273
8K82|1|C1|U|2274
8K82|1|C1|A|2275
8K82|1|C1|G|2276
*
8K82|1|C1|U|2310
8K82|1|C1|G|2311
8K82|1|C1|A|2312
8K82|1|C1|A|2313
8K82|1|C1|U|2314
8K82|1|C1|G|2315
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain C5
- Transfer RNA; tRNA
- Chain CN
- General negative regulator of transcription subunit 5
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain Ln
- Large ribosomal subunit protein eL41A
Coloring options: