J4_8OEQ_016
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|2292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OEQ_016 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0439
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|AS|C|2170
8OEQ|1|AS|U|2171
8OEQ|1|AS|G|2172
*
8OEQ|1|AS|C|2226
8OEQ|1|AS|G|2227
*
8OEQ|1|AS|C|2245
8OEQ|1|AS|U|2246
8OEQ|1|AS|U|2247
8OEQ|1|AS|A|2248
8OEQ|1|AS|A|2249
8OEQ|1|AS|G|2250
8OEQ|1|AS|G|2251
8OEQ|1|AS|U|2252
8OEQ|1|AS|A|2253
8OEQ|1|AS|G|2254
*
8OEQ|1|AS|U|2288
8OEQ|1|AS|G|2289
8OEQ|1|AS|A|2290
8OEQ|1|AS|A|2291
8OEQ|1|AS|U|2292
8OEQ|1|AS|G|2293
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain CI
- 60S ribosomal protein L41
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: