J4_8OEQ_017
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|2629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OEQ_017 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.0515
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|AS|C|2626
8OEQ|1|AS|U|2627
8OEQ|1|AS|A|2628
8OEQ|1|AS|A|2629
8OEQ|1|AS|G|2630
*
8OEQ|1|AS|U|2684
8OEQ|1|AS|U|2685
8OEQ|1|AS|G|2686
8OEQ|1|AS|A|2687
8OEQ|1|AS|U|2688
*
8OEQ|1|AS|A|2712
8OEQ|1|AS|C|2713
8OEQ|1|AS|C|2714
*
8OEQ|1|AS|G|2723
8OEQ|1|AS|U|2724
8OEQ|1|AS|G|2725
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BO
- 60S ribosomal protein L21-A
- Chain BW
- 60S ribosomal protein L29
- Chain CJ
- 60S ribosomal protein L42-B
Coloring options: