J4_8OEQ_021
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8OEQ|1|CM|A|357
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OEQ_021 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.0546
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|CM|C|99
8OEQ|1|CM|A|100
8OEQ|1|CM|U|101
8OEQ|1|CM|U|102
8OEQ|1|CM|A|103
8OEQ|1|CM|A|104
8OEQ|1|CM|A|105
8OEQ|1|CM|U|106
8OEQ|1|CM|C|107
*
8OEQ|1|CM|G|305
8OEQ|1|CM|C|306
8OEQ|1|CM|C|307
*
8OEQ|1|CM|G|355
8OEQ|1|CM|U|356
8OEQ|1|CM|A|357
8OEQ|1|CM|A|358
8OEQ|1|CM|C|359
*
8OEQ|1|CM|G|381
8OEQ|1|CM|G|382
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CR
- 40S ribosomal protein S4
- Chain CV
- 40S ribosomal protein S8
- Chain CY
- 40S ribosomal protein S11A
- Chain DK
- Ribosomal protein S23 (S12)
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