J4_8OH6_002
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGCG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OH6_002 not in the Motif Atlas
- Homologous match to J4_8C3A_002
- Geometric discrepancy: 0.0467
- The information below is about J4_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OH6|1|1|C|184
8OH6|1|1|U|185
8OH6|1|1|A|186
8OH6|1|1|U|187
8OH6|1|1|G|188
*
8OH6|1|1|C|204
8OH6|1|1|G|205
8OH6|1|1|U|206
8OH6|1|1|C|207
*
8OH6|1|1|G|211
8OH6|1|1|A|212
8OH6|1|1|G|213
*
8OH6|1|1|C|225
8OH6|1|1|G|226
8OH6|1|1|U|227
8OH6|1|1|G|228
8OH6|1|1|C|229
8OH6|1|1|G|230
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- Ribosomal protein L24
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 60S ribosomal protein L4-B
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