J4_8OH6_016

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8OH6|1|AS|U|2292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OH6_016 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0533

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OH6|1|AS|C|2170
8OH6|1|AS|U|2171
8OH6|1|AS|G|2172
*
8OH6|1|AS|C|2226
8OH6|1|AS|G|2227
*
8OH6|1|AS|C|2245
8OH6|1|AS|U|2246
8OH6|1|AS|U|2247
8OH6|1|AS|A|2248
8OH6|1|AS|A|2249
8OH6|1|AS|G|2250
8OH6|1|AS|G|2251
8OH6|1|AS|U|2252
8OH6|1|AS|A|2253
8OH6|1|AS|G|2254
*
8OH6|1|AS|U|2288
8OH6|1|AS|G|2289
8OH6|1|AS|A|2290
8OH6|1|AS|A|2291
8OH6|1|AS|U|2292
8OH6|1|AS|G|2293

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CI

60S ribosomal protein L41

Chain CM

Small subunit ribosomal RNA; SSU rRNA