J4_8OHD_002

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8OHD|1|5|A|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OHD|1|5|C|196
8OHD|1|5|A|197
8OHD|1|5|A|198
8OHD|1|5|G|199
*
8OHD|1|5|C|215
8OHD|1|5|C|216
8OHD|1|5|C|217
8OHD|1|5|A|218
8OHD|1|5|G|219
8OHD|1|5|C|220
8OHD|1|5|C|221
8OHD|1|5|C|222
*
8OHD|1|5|G|226
8OHD|1|5|A|227
8OHD|1|5|C|228
*
8OHD|1|5|G|240
8OHD|1|5|G|241
8OHD|1|5|U|242
8OHD|1|5|A|243
8OHD|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26