J4_8OHD_006

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8OHD|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OHD|1|5|G|2618
8OHD|1|5|G|2619
*
8OHD|1|5|U|2637
8OHD|1|5|G|2638
8OHD|1|5|U|2639
8OHD|1|5|G|2640
8OHD|1|5|A|2641
8OHD|1|5|A|2642
*
8OHD|1|5|U|2692
8OHD|1|5|G|2693
8OHD|1|5|G|2694
8OHD|1|5|A|2695
8OHD|1|5|A|2696
8OHD|1|5|A|2697
8OHD|1|5|G|2698
*
8OHD|1|5|U|2718
8OHD|1|5|C|2719

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38