J4_8OIP_001

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGCCCCGG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

8OIP|1|AA|A|54, 8OIP|1|AA|C|171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AA|C|52
8OIP|1|AA|A|53
8OIP|1|AA|A|54
8OIP|1|AA|G|55
*
8OIP|1|AA|C|62
8OIP|1|AA|G|63
8OIP|1|AA|C|64
8OIP|1|AA|C|65
8OIP|1|AA|C|66
8OIP|1|AA|C|67
8OIP|1|AA|G|68
8OIP|1|AA|G|69
*
8OIP|1|AA|C|156
8OIP|1|AA|A|157
8OIP|1|AA|C|158
*
8OIP|1|AA|G|167
8OIP|1|AA|A|168
8OIP|1|AA|A|169
8OIP|1|AA|A|170
8OIP|1|AA|C|171
8OIP|1|AA|A|172
8OIP|1|AA|G|173

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

Mitochondrial ribosomal protein S26

Chain Aj

Mitochondrial ribosomal protein S34