J4_8OIP_005

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CGAUAG*CCCUAAACCCAA*UC

Length

23 nucleotides

Bulged bases

8OIP|1|AA|A|297, 8OIP|1|AA|A|455, 8OIP|1|AA|C|458, 8OIP|1|AA|A|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OIP_005 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.192

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8OIP|1|AA|G|296
8OIP|1|AA|A|297
8OIP|1|AA|G|298
*
8OIP|1|AA|C|404
8OIP|1|AA|G|405
8OIP|1|AA|A|406
8OIP|1|AA|U|407
8OIP|1|AA|A|408
8OIP|1|AA|G|409
*
8OIP|1|AA|C|450
8OIP|1|AA|C|451
8OIP|1|AA|C|452
8OIP|1|AA|U|453
8OIP|1|AA|A|454
8OIP|1|AA|A|455
8OIP|1|AA|A|456
8OIP|1|AA|C|457
8OIP|1|AA|C|458
8OIP|1|AA|C|459
8OIP|1|AA|A|460
8OIP|1|AA|A|461
*
8OIP|1|AA|U|483
8OIP|1|AA|C|484

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AJ

Mitochondrial ribosomal protein S12

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AN

uS17m

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain AT

Mitochondrial ribosomal protein S25

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain containing 1