J4_8OIP_006

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCA*UAU*AAAAUG*CC

Length

15 nucleotides

Bulged bases

8OIP|1|AG|U|8, 8OIP|1|AG|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AG|G|7
8OIP|1|AG|U|8
8OIP|1|AG|C|9
8OIP|1|AG|A|10
*
8OIP|1|AG|U|22
8OIP|1|AG|A|23
8OIP|1|AG|U|24
*
8OIP|1|AG|A|40
8OIP|1|AG|A|41
8OIP|1|AG|A|42
8OIP|1|AG|A|43
8OIP|1|AG|U|44
8OIP|1|AG|G|45
*
8OIP|1|AG|C|60
8OIP|1|AG|C|61

Current chains

Chain AG

P-site Met-tRNA(fMet)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

Peptide chain release factor 1, mitochondrial