J4_8OIQ_005

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8OIQ|1|B8|U|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OIQ_005 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1504

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8OIQ|1|B8|C|876
8OIQ|1|B8|U|877
8OIQ|1|B8|G|878
*
8OIQ|1|B8|C|901
8OIQ|1|B8|C|902
*
8OIQ|1|B8|G|919
8OIQ|1|B8|C|920
8OIQ|1|B8|A|921
8OIQ|1|B8|A|922
8OIQ|1|B8|A|923
8OIQ|1|B8|G|924
8OIQ|1|B8|G|925
8OIQ|1|B8|U|926
8OIQ|1|B8|A|927
8OIQ|1|B8|G|928
*
8OIQ|1|B8|U|962
8OIQ|1|B8|G|963
8OIQ|1|B8|A|964
8OIQ|1|B8|A|965
8OIQ|1|B8|U|966
8OIQ|1|B8|G|967

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)

Chain BL

Mitochondrial ribosomal protein L2