J4_8OIQ_007
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAG*CAA*UAGAUG*CC
- Length
- 15 nucleotides
- Bulged bases
- 8OIQ|1|B9|U|8, 8OIQ|1|B9|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OIQ_007 not in the Motif Atlas
- Homologous match to J4_5HR7_002
- Geometric discrepancy: 0.5508
- The information below is about J4_5HR7_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8OIQ|1|B9|G|7
8OIQ|1|B9|U|8
8OIQ|1|B9|A|9
8OIQ|1|B9|G|10
*
8OIQ|1|B9|C|26
8OIQ|1|B9|A|27
8OIQ|1|B9|A|28
*
8OIQ|1|B9|U|44
8OIQ|1|B9|A|45
8OIQ|1|B9|G|46
8OIQ|1|B9|A|47
8OIQ|1|B9|U|48
8OIQ|1|B9|G|49
*
8OIQ|1|B9|C|62
8OIQ|1|B9|C|63
Current chains
- Chain B9
- CP Phe-tRNA
Nearby chains
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BW
- Mitochondrial ribosomal protein L18
- Chain Bn
- Mitochondrial ribosomal protein L38
- Chain Bp
- Mitochondrial ribosomal protein L40
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
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