J4_8OIT_003

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAGCCUGCG*CAAUUAAC*GUCAACC*GCA

Length

28 nucleotides

Bulged bases

8OIT|1|B8|U|702, 8OIT|1|B8|A|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIT|1|B8|U|666
8OIT|1|B8|A|667
8OIT|1|B8|A|668
8OIT|1|B8|G|669
8OIT|1|B8|C|670
8OIT|1|B8|C|671
8OIT|1|B8|U|672
8OIT|1|B8|G|673
8OIT|1|B8|C|674
8OIT|1|B8|G|675
*
8OIT|1|B8|C|698
8OIT|1|B8|A|699
8OIT|1|B8|A|700
8OIT|1|B8|U|701
8OIT|1|B8|U|702
8OIT|1|B8|A|703
8OIT|1|B8|A|704
8OIT|1|B8|C|705
*
8OIT|1|B8|G|751
8OIT|1|B8|U|752
8OIT|1|B8|C|753
8OIT|1|B8|A|754
8OIT|1|B8|A|755
8OIT|1|B8|C|756
8OIT|1|B8|C|757
*
8OIT|1|B8|G|766
8OIT|1|B8|C|767
8OIT|1|B8|A|768

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BB

39S ribosomal protein L23, mitochondrial

Chain BF

39S ribosomal protein L47, mitochondrial

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain Bi

39S ribosomal protein S30, mitochondrial

Chain Bq

39S ribosomal protein L41, mitochondrial