J4_8OIT_005

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8OIT|1|B8|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OIT_005 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1472

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8OIT|1|B8|C|874
8OIT|1|B8|U|875
8OIT|1|B8|G|876
*
8OIT|1|B8|C|899
8OIT|1|B8|C|900
*
8OIT|1|B8|G|917
8OIT|1|B8|C|918
8OIT|1|B8|A|919
8OIT|1|B8|A|920
8OIT|1|B8|A|921
8OIT|1|B8|G|922
8OIT|1|B8|G|923
8OIT|1|B8|U|924
8OIT|1|B8|A|925
8OIT|1|B8|G|926
*
8OIT|1|B8|U|960
8OIT|1|B8|G|961
8OIT|1|B8|A|962
8OIT|1|B8|A|963
8OIT|1|B8|U|964
8OIT|1|B8|G|965

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(Met)

Chain BL

39S ribosomal protein L2, mitochondrial