J4_8OIT_006

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAA*UA*UCCCCCGU*AGUAUUAU

Length

21 nucleotides

Bulged bases

8OIT|1|B8|C|1498, 8OIT|1|B8|A|1528, 8OIT|1|B8|U|1529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIT|1|B8|A|1441
8OIT|1|B8|A|1442
8OIT|1|B8|A|1443
*
8OIT|1|B8|U|1473
8OIT|1|B8|A|1474
*
8OIT|1|B8|U|1497
8OIT|1|B8|C|1498
8OIT|1|B8|C|1499
8OIT|1|B8|C|1500
8OIT|1|B8|C|1501
8OIT|1|B8|C|1502
8OIT|1|B8|G|1503
8OIT|1|B8|U|1504
*
8OIT|1|B8|A|1525
8OIT|1|B8|G|1526
8OIT|1|B8|U|1527
8OIT|1|B8|A|1528
8OIT|1|B8|U|1529
8OIT|1|B8|U|1530
8OIT|1|B8|A|1531
8OIT|1|B8|U|1532

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BR

39S ribosomal protein L13, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial

Chain Bh

39S ribosomal protein S18a, mitochondrial

Chain Bl

39S ribosomal protein L36, mitochondrial