J4_8OJ0_007
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OJ0_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1244
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OJ0|1|5|G|3634
8OJ0|1|5|A|3635
8OJ0|1|5|C|3636
8OJ0|1|5|U|3637
8OJ0|1|5|G|3638
*
8OJ0|1|5|C|3650
8OJ0|1|5|A|3651
8OJ0|1|5|A|3652
8OJ0|1|5|A|3653
8OJ0|1|5|G|3654
*
8OJ0|1|5|U|3690
8OJ0|1|5|G|3691
8OJ0|1|5|A|3692
8OJ0|1|5|U|3693
8OJ0|1|5|U|3694
*
8OJ0|1|5|A|3821
8OJ0|1|5|U|3822
8OJ0|1|5|G|3823
8OJ0|1|5|A|3824
8OJ0|1|5|A|3825
8OJ0|1|5|C|3826
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Lp
- 60S ribosomal protein L37a
Coloring options: