J4_8OJ8_007

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OJ8_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.12

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8OJ8|1|5|G|3634
8OJ8|1|5|A|3635
8OJ8|1|5|C|3636
8OJ8|1|5|U|3637
8OJ8|1|5|G|3638
*
8OJ8|1|5|C|3650
8OJ8|1|5|A|3651
8OJ8|1|5|A|3652
8OJ8|1|5|A|3653
8OJ8|1|5|G|3654
*
8OJ8|1|5|U|3690
8OJ8|1|5|G|3691
8OJ8|1|5|A|3692
8OJ8|1|5|U|3693
8OJ8|1|5|U|3694
*
8OJ8|1|5|A|3821
8OJ8|1|5|U|3822
8OJ8|1|5|G|3823
8OJ8|1|5|A|3824
8OJ8|1|5|A|3825
8OJ8|1|5|C|3826

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a