J4_8OO0_005
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GG*CU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OO0_005 not in the Motif Atlas
- Homologous match to J4_8P9A_016
- Geometric discrepancy: 0.1888
- The information below is about J4_8P9A_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75575.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8OO0|1|1|G|1654
8OO0|1|1|G|1655
*
8OO0|1|1|C|1673
8OO0|1|1|U|1674
*
8OO0|1|1|A|1732
8OO0|1|1|G|1733
*
8OO0|1|1|U|1752
8OO0|1|1|C|1753
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LR
- Ribosomal protein L19
- Chain LU
- 60S ribosomal protein L22-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lk
- 60S ribosomal protein L38
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