J4_8OO0_007
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8OO0|1|1|U|2277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OO0_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1426
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OO0|1|1|C|2155
8OO0|1|1|U|2156
8OO0|1|1|G|2157
*
8OO0|1|1|C|2211
8OO0|1|1|G|2212
*
8OO0|1|1|C|2230
8OO0|1|1|U|2231
8OO0|1|1|U|2232
8OO0|1|1|A|2233
8OO0|1|1|A|2234
8OO0|1|1|G|2235
8OO0|1|1|G|2236
8OO0|1|1|U|2237
8OO0|1|1|A|2238
8OO0|1|1|G|2239
*
8OO0|1|1|U|2273
8OO0|1|1|G|2274
8OO0|1|1|A|2275
8OO0|1|1|A|2276
8OO0|1|1|U|2277
8OO0|1|1|G|2278
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Ln
- 60S ribosomal protein L41-A
Coloring options: