J4_8OO0_008

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

8OO0|1|1|A|2616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|1|C|2613
8OO0|1|1|U|2614
8OO0|1|1|A|2615
8OO0|1|1|A|2616
8OO0|1|1|G|2617
*
8OO0|1|1|U|2671
8OO0|1|1|U|2672
8OO0|1|1|G|2673
*
8OO0|1|1|C|2700
8OO0|1|1|C|2701
*
8OO0|1|1|G|2710
8OO0|1|1|U|2711
8OO0|1|1|G|2712

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

Ribosome-associated molecular chaperone SSB1

Chain LD

60S ribosomal protein l5-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lo

60S ribosomal protein L44-like protein