J4_8OO0_010
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8OO0|1|2|A|356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OO0_010 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1283
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|2|C|98
8OO0|1|2|A|99
8OO0|1|2|U|100
8OO0|1|2|U|101
8OO0|1|2|A|102
8OO0|1|2|A|103
8OO0|1|2|A|104
8OO0|1|2|U|105
8OO0|1|2|C|106
*
8OO0|1|2|G|304
8OO0|1|2|C|305
8OO0|1|2|C|306
*
8OO0|1|2|G|354
8OO0|1|2|U|355
8OO0|1|2|A|356
8OO0|1|2|A|357
8OO0|1|2|C|358
*
8OO0|1|2|G|380
8OO0|1|2|G|381
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
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