J4_8OO0_013

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UACACUG*CGUGCUGG*CGAGGAA

Length

26 nucleotides

Bulged bases

8OO0|1|2|U|1469, 8OO0|1|2|G|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|2|U|1165
8OO0|1|2|G|1166
8OO0|1|2|G|1167
8OO0|1|2|A|1168
*
8OO0|1|2|U|1464
8OO0|1|2|A|1465
8OO0|1|2|C|1466
8OO0|1|2|A|1467
8OO0|1|2|C|1468
8OO0|1|2|U|1469
8OO0|1|2|G|1470
*
8OO0|1|2|C|1529
8OO0|1|2|G|1530
8OO0|1|2|U|1531
8OO0|1|2|G|1532
8OO0|1|2|C|1533
8OO0|1|2|U|1534
8OO0|1|2|G|1535
8OO0|1|2|G|1536
*
8OO0|1|2|C|1567
8OO0|1|2|G|1568
8OO0|1|2|A|1569
8OO0|1|2|G|1570
8OO0|1|2|G|1571
8OO0|1|2|A|1572
8OO0|1|2|A|1573

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein

Chain SZ

40S ribosomal protein S25