J4_8P09_001
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8P09|1|1|U|9, 8P09|1|1|U|47, 8P09|1|1|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P09_001 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.1618
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8P09|1|1|G|8
8P09|1|1|U|9
8P09|1|1|G|10
8P09|1|1|G|11
*
8P09|1|1|U|25
8P09|1|1|G|26
8P09|1|1|C|27
*
8P09|1|1|G|43
8P09|1|1|A|44
8P09|1|1|G|45
8P09|1|1|G|46
8P09|1|1|U|47
8P09|1|1|C|48
8P09|1|1|G|49
*
8P09|1|1|C|65
8P09|1|1|C|66
Current chains
- Chain 1
- initiator methionylated tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain U
- 40S ribosomal protein uS13
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