J4_8P16_015
3D structure
- PDB id
- 8P16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E167K RF2 on E. coli 70S release complex with UGG (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8P16|1|5|U|8, 8P16|1|5|U|47, 8P16|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P16_015 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1365
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8P16|1|5|G|7
8P16|1|5|U|8
8P16|1|5|G|9
8P16|1|5|G|10
*
8P16|1|5|C|25
8P16|1|5|G|26
8P16|1|5|U|27
*
8P16|1|5|A|43
8P16|1|5|A|44
8P16|1|5|G|45
8P16|1|5|G|46
8P16|1|5|U|47
8P16|1|5|C|48
8P16|1|5|G|49
*
8P16|1|5|C|65
8P16|1|5|C|66
Current chains
- Chain 5
- tRNA(fMet)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 6
- Peptide chain release factor RF2
- Chain M
- Large ribosomal subunit protein uL16
- Chain r
- Small ribosomal subunit protein uS13
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