J4_8P2F_004

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

8P2F|1|A|G|1309, 8P2F|1|A|A|1310, 8P2F|1|A|A|1312, 8P2F|1|A|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2F_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.0906

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8P2F|1|A|C|1308
8P2F|1|A|G|1309
8P2F|1|A|A|1310
8P2F|1|A|A|1311
8P2F|1|A|A|1312
8P2F|1|A|G|1313
*
8P2F|1|A|C|1331
8P2F|1|A|C|1332
*
8P2F|1|A|G|1689
8P2F|1|A|A|1690
8P2F|1|A|G|1691
8P2F|1|A|C|1692
*
8P2F|1|A|G|2036
8P2F|1|A|G|2037

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22