J4_8P2F_012
3D structure
- PDB id
- 8P2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8P2F|1|D|U|8
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P2F_012 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.1847
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8P2F|1|D|G|7
8P2F|1|D|U|8
8P2F|1|D|G|9
8P2F|1|D|G|10
*
8P2F|1|D|C|25
8P2F|1|D|G|26
8P2F|1|D|U|27
*
8P2F|1|D|A|43
8P2F|1|D|A|44
8P2F|1|D|G|45
8P2F|1|D|G|46
8P2F|1|D|U|47
8P2F|1|D|C|48
8P2F|1|D|G|49
*
8P2F|1|D|C|65
8P2F|1|D|C|66
Current chains
- Chain D
- tRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33 1
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain h
- 30S ribosomal protein S7
- Chain l
- 30S ribosomal protein S11
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