J4_8P2F_014

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2F|1|a|G|114
8P2F|1|a|A|115
8P2F|1|a|G|116
8P2F|1|a|U|117
8P2F|1|a|A|118
8P2F|1|a|A|119
8P2F|1|a|C|120
8P2F|1|a|A|121
8P2F|1|a|C|122
*
8P2F|1|a|G|246
8P2F|1|a|C|247
8P2F|1|a|U|248
*
8P2F|1|a|A|294
8P2F|1|a|U|295
8P2F|1|a|A|296
8P2F|1|a|G|297
*
8P2F|1|a|C|319
8P2F|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17