J4_8P2F_016
3D structure
- PDB id
- 8P2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8P2F|1|a|C|584, 8P2F|1|a|A|823
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P2F_016 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.057
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8P2F|1|a|G|583
8P2F|1|a|C|584
8P2F|1|a|G|585
*
8P2F|1|a|C|772
8P2F|1|a|G|773
8P2F|1|a|A|774
8P2F|1|a|A|775
8P2F|1|a|A|776
8P2F|1|a|G|777
*
8P2F|1|a|C|818
8P2F|1|a|C|819
8P2F|1|a|G|820
8P2F|1|a|U|821
8P2F|1|a|A|822
8P2F|1|a|A|823
8P2F|1|a|A|824
8P2F|1|a|C|825
8P2F|1|a|G|826
8P2F|1|a|A|827
8P2F|1|a|U|828
8P2F|1|a|G|829
*
8P2F|1|a|C|888
8P2F|1|a|C|889
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
Coloring options: