J4_8P2H_002

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2H_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0726

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8P2H|1|A|C|340
8P2H|1|A|G|341
8P2H|1|A|A|342
8P2H|1|A|A|343
8P2H|1|A|U|344
*
8P2H|1|A|A|359
8P2H|1|A|A|360
8P2H|1|A|U|361
8P2H|1|A|C|362
*
8P2H|1|A|G|366
8P2H|1|A|A|367
8P2H|1|A|A|368
*
8P2H|1|A|U|380
8P2H|1|A|G|381
8P2H|1|A|U|382
8P2H|1|A|A|383
8P2H|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24