J4_8P2H_009

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

8P2H|1|A|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2H_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.071

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8P2H|1|A|C|1860
8P2H|1|A|U|1861
8P2H|1|A|G|1862
*
8P2H|1|A|C|1932
8P2H|1|A|G|1933
*
8P2H|1|A|C|1951
8P2H|1|A|C|1952
8P2H|1|A|U|1953
8P2H|1|A|A|1954
8P2H|1|A|A|1955
8P2H|1|A|G|1956
8P2H|1|A|G|1957
8P2H|1|A|U|1958
8P2H|1|A|A|1959
8P2H|1|A|G|1960
*
8P2H|1|A|C|1994
8P2H|1|A|G|1995
8P2H|1|A|A|1996
8P2H|1|A|A|1997
8P2H|1|A|A|1998
8P2H|1|A|G|1999

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA