J4_8P2H_014

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAG*CAC

Length

22 nucleotides

Bulged bases

8P2H|1|a|U|183, 8P2H|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2H|1|a|G|142
8P2H|1|a|A|143
8P2H|1|a|C|144
*
8P2H|1|a|G|178
8P2H|1|a|A|179
8P2H|1|a|U|180
8P2H|1|a|A|181
8P2H|1|a|A|182
8P2H|1|a|U|183
8P2H|1|a|A|184
8P2H|1|a|U|185
*
8P2H|1|a|A|206
8P2H|1|a|G|207
8P2H|1|a|U|208
8P2H|1|a|G|209
8P2H|1|a|A|210
8P2H|1|a|A|211
8P2H|1|a|A|212
8P2H|1|a|G|213
*
8P2H|1|a|C|227
8P2H|1|a|A|228
8P2H|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20