J4_8P2K_003
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 8P2K|1|AT|U|8, 8P2K|1|AT|U|47, 8P2K|1|AT|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P2K_003 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.1624
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8P2K|1|AT|G|7
8P2K|1|AT|U|8
8P2K|1|AT|A|9
8P2K|1|AT|G|10
*
8P2K|1|AT|C|25
8P2K|1|AT|G|26
8P2K|1|AT|U|27
*
8P2K|1|AT|A|43
8P2K|1|AT|A|44
8P2K|1|AT|G|45
8P2K|1|AT|G|46
8P2K|1|AT|U|47
8P2K|1|AT|C|48
8P2K|1|AT|C|49
*
8P2K|1|AT|G|65
8P2K|1|AT|C|66
Current chains
- Chain AT
- P-site Val-tRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ar
- 40S ribosomal protein S18
- Chain Ay
- 40S ribosomal protein S25
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 60S ribosomal protein L10
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