J4_8P2K_006

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

8P2K|1|B5|G|859, 8P2K|1|B5|U|873, 8P2K|1|B5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|B5|C|706
8P2K|1|B5|C|707
*
8P2K|1|B5|G|855
8P2K|1|B5|A|856
8P2K|1|B5|G|857
8P2K|1|B5|G|858
8P2K|1|B5|G|859
8P2K|1|B5|A|860
8P2K|1|B5|G|861
*
8P2K|1|B5|U|871
8P2K|1|B5|G|872
8P2K|1|B5|U|873
8P2K|1|B5|C|874
8P2K|1|B5|G|875
8P2K|1|B5|C|876
8P2K|1|B5|C|877
8P2K|1|B5|G|878
*
8P2K|1|B5|C|1222
8P2K|1|B5|A|1223
8P2K|1|B5|C|1224
8P2K|1|B5|G|1225
8P2K|1|B5|G|1226
8P2K|1|B5|G|1227
8P2K|1|B5|G|1228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Be

Ribosomal protein L32