J4_8P85_018

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8P85|1|AR|U|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P85|1|AR|C|2192
8P85|1|AR|U|2193
8P85|1|AR|G|2194
*
8P85|1|AR|C|2248
8P85|1|AR|G|2249
*
8P85|1|AR|C|2267
8P85|1|AR|U|2268
8P85|1|AR|U|2269
8P85|1|AR|A|2270
8P85|1|AR|A|2271
8P85|1|AR|G|2272
8P85|1|AR|G|2273
8P85|1|AR|U|2274
8P85|1|AR|A|2275
8P85|1|AR|G|2276
*
8P85|1|AR|U|2310
8P85|1|AR|G|2311
8P85|1|AR|A|2312
8P85|1|AR|A|2313
8P85|1|AR|U|2314
8P85|1|AR|G|2315

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DP

Large ribosomal subunit protein eL41B

Chain sR

Small subunit ribosomal RNA; SSU rRNA