J4_8PEG_002

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PEG_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0895

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8PEG|1|7|G|297
8PEG|1|7|G|298
8PEG|1|7|A|299
8PEG|1|7|A|300
8PEG|1|7|G|301
*
8PEG|1|7|C|316
8PEG|1|7|G|317
8PEG|1|7|C|318
8PEG|1|7|G|319
*
8PEG|1|7|C|323
8PEG|1|7|A|324
8PEG|1|7|G|325
*
8PEG|1|7|C|337
8PEG|1|7|G|338
8PEG|1|7|U|339
8PEG|1|7|A|340
8PEG|1|7|C|341

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain x

50S ribosomal protein L24