J4_8PEG_009

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8PEG|1|7|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PEG_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0879

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8PEG|1|7|C|1833
8PEG|1|7|U|1834
8PEG|1|7|2MG|1835
*
8PEG|1|7|C|1905
8PEG|1|7|G|1906
*
8PEG|1|7|C|1924
8PEG|1|7|C|1925
8PEG|1|7|U|1926
8PEG|1|7|A|1927
8PEG|1|7|A|1928
8PEG|1|7|G|1929
8PEG|1|7|G|1930
8PEG|1|7|U|1931
8PEG|1|7|A|1932
8PEG|1|7|G|1933
*
8PEG|1|7|C|1967
8PEG|1|7|G|1968
8PEG|1|7|A|1969
8PEG|1|7|A|1970
8PEG|1|7|U|1971
8PEG|1|7|G|1972

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2