J4_8PHJ_001
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8PHJ|1|7|4SU|8, 8PHJ|1|7|U|48, 8PHJ|1|7|C|49
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PHJ_001 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.245
- The information below is about J4_9DFC_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8PHJ|1|7|G|7
8PHJ|1|7|4SU|8
8PHJ|1|7|G|9
8PHJ|1|7|G|10
*
8PHJ|1|7|C|26
8PHJ|1|7|G|27
8PHJ|1|7|U|28
*
8PHJ|1|7|A|44
8PHJ|1|7|A|45
8PHJ|1|7|G|46
8PHJ|1|7|A|47
8PHJ|1|7|U|48
8PHJ|1|7|C|49
8PHJ|1|7|G|50
*
8PHJ|1|7|C|66
8PHJ|1|7|C|67
Current chains
- Chain 7
- fMet-tRNA(fMet)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain X
- CRISPR-associated protein, APE2256 family
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: