J4_8PHJ_002

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

G(4SU)GG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

8PHJ|1|8|4SU|8, 8PHJ|1|8|U|48, 8PHJ|1|8|C|49

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PHJ_002 not in the Motif Atlas

Homologous match to J4_5HR6_001

Geometric discrepancy: 0.2518

The information below is about J4_5HR6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8PHJ|1|8|G|7
8PHJ|1|8|4SU|8
8PHJ|1|8|G|9
8PHJ|1|8|G|10
*
8PHJ|1|8|C|26
8PHJ|1|8|G|27
8PHJ|1|8|U|28
*
8PHJ|1|8|A|44
8PHJ|1|8|A|45
8PHJ|1|8|G|46
8PHJ|1|8|A|47
8PHJ|1|8|U|48
8PHJ|1|8|C|49
8PHJ|1|8|G|50
*
8PHJ|1|8|C|66
8PHJ|1|8|C|67

Current chains

Chain 8

fMet-tRNA(fMet)

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain G

Small ribosomal subunit protein uS7