3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8PHJ|1|A|C|576, 8PHJ|1|A|A|815, 8PHJ|1|A|C|817, 8PHJ|1|A|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8PHJ_005 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0655
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8PHJ|1|A|G|575
8PHJ|1|A|C|576
8PHJ|1|A|G|577
*
8PHJ|1|A|C|764
8PHJ|1|A|G|765
8PHJ|1|A|A|766
8PHJ|1|A|A|767
8PHJ|1|A|A|768
8PHJ|1|A|G|769
*
8PHJ|1|A|C|810
8PHJ|1|A|C|811
8PHJ|1|A|G|812
8PHJ|1|A|U|813
8PHJ|1|A|A|814
8PHJ|1|A|A|815
8PHJ|1|A|A|816
8PHJ|1|A|C|817
8PHJ|1|A|G|818
8PHJ|1|A|A|819
8PHJ|1|A|U|820
8PHJ|1|A|G|821
*
8PHJ|1|A|C|879
8PHJ|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
Small ribosomal subunit protein uS8
Chain L
Small ribosomal subunit protein uS12
Chain O
Small ribosomal subunit protein uS15
Chain Q
Small ribosomal subunit protein uS17
Chain U
Small ribosomal subunit protein bS21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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