3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
8PHJ|1|a|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8PHJ_010 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0645
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8PHJ|1|a|G|1310
8PHJ|1|a|G|1311
8PHJ|1|a|U|1312
8PHJ|1|a|U|1313
8PHJ|1|a|C|1314
*
8PHJ|1|a|G|1338
8PHJ|1|a|G|1339
8PHJ|1|a|U|1340
8PHJ|1|a|G|1341
8PHJ|1|a|A|1342
8PHJ|1|a|G|1343
*
8PHJ|1|a|C|1404
8PHJ|1|a|U|1405
*
8PHJ|1|a|A|1597
8PHJ|1|a|A|1598
8PHJ|1|a|U|1599
8PHJ|1|a|C|1600
8PHJ|1|a|G|1601
8PHJ|1|a|U|1602
8PHJ|1|a|A|1603
8PHJ|1|a|C|1604

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain s
Large ribosomal subunit protein uL23

Coloring options:


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