J4_8PHJ_010
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8PHJ|1|a|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PHJ_010 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.0645
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PHJ|1|a|G|1310
8PHJ|1|a|G|1311
8PHJ|1|a|U|1312
8PHJ|1|a|U|1313
8PHJ|1|a|C|1314
*
8PHJ|1|a|G|1338
8PHJ|1|a|G|1339
8PHJ|1|a|U|1340
8PHJ|1|a|G|1341
8PHJ|1|a|A|1342
8PHJ|1|a|G|1343
*
8PHJ|1|a|C|1404
8PHJ|1|a|U|1405
*
8PHJ|1|a|A|1597
8PHJ|1|a|A|1598
8PHJ|1|a|U|1599
8PHJ|1|a|C|1600
8PHJ|1|a|G|1601
8PHJ|1|a|U|1602
8PHJ|1|a|A|1603
8PHJ|1|a|C|1604
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: