3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
8PHJ|1|a|U|1971
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8PHJ_014 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.107
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8PHJ|1|a|C|1833
8PHJ|1|a|U|1834
8PHJ|1|a|2MG|1835
*
8PHJ|1|a|C|1905
8PHJ|1|a|G|1906
*
8PHJ|1|a|C|1924
8PHJ|1|a|C|1925
8PHJ|1|a|U|1926
8PHJ|1|a|A|1927
8PHJ|1|a|A|1928
8PHJ|1|a|G|1929
8PHJ|1|a|G|1930
8PHJ|1|a|U|1931
8PHJ|1|a|A|1932
8PHJ|1|a|G|1933
*
8PHJ|1|a|C|1967
8PHJ|1|a|G|1968
8PHJ|1|a|A|1969
8PHJ|1|a|A|1970
8PHJ|1|a|U|1971
8PHJ|1|a|G|1972

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain 7
Transfer RNA; tRNA
Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain c
Large ribosomal subunit protein uL2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.155 s