J4_8PJ3_003
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8PJ3|1|w|U|8, 8PJ3|1|w|U|47, 8PJ3|1|w|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PJ3_003 not in the Motif Atlas
- Homologous match to J4_7UQ6_001
- Geometric discrepancy: 0.2689
- The information below is about J4_7UQ6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8PJ3|1|w|G|7
8PJ3|1|w|U|8
8PJ3|1|w|G|9
8PJ3|1|w|G|10
*
8PJ3|1|w|U|25
8PJ3|1|w|G|26
8PJ3|1|w|C|27
*
8PJ3|1|w|G|43
8PJ3|1|w|A|44
8PJ3|1|w|G|45
8PJ3|1|w|G|46
8PJ3|1|w|U|47
8PJ3|1|w|C|48
8PJ3|1|w|G|49
*
8PJ3|1|w|C|65
8PJ3|1|w|C|66
Current chains
- Chain w
- Initiator Met-tRNA-i
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain e
- 40S ribosomal protein S25
- Chain f
- 40S ribosomal protein S18
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
- Chain z
- Eukaryotic translation initiation factor 5
Coloring options: