J4_8PNN_018

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8PNN|1|AR|U|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PNN_018 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.0475

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8PNN|1|AR|C|2192
8PNN|1|AR|U|2193
8PNN|1|AR|G|2194
*
8PNN|1|AR|C|2248
8PNN|1|AR|G|2249
*
8PNN|1|AR|C|2267
8PNN|1|AR|U|2268
8PNN|1|AR|U|2269
8PNN|1|AR|A|2270
8PNN|1|AR|A|2271
8PNN|1|AR|G|2272
8PNN|1|AR|G|2273
8PNN|1|AR|U|2274
8PNN|1|AR|A|2275
8PNN|1|AR|G|2276
*
8PNN|1|AR|U|2310
8PNN|1|AR|G|2311
8PNN|1|AR|A|2312
8PNN|1|AR|A|2313
8PNN|1|AR|U|2314
8PNN|1|AR|G|2315

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DP

Large ribosomal subunit protein eL41B

Chain sR

Small subunit ribosomal RNA; SSU rRNA