J4_8PV3_002

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAG*CGCC*GAG*CGUAUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV3|1|C1|U|180
8PV3|1|C1|G|181
8PV3|1|C1|A|182
8PV3|1|C1|G|183
*
8PV3|1|C1|C|199
8PV3|1|C1|G|200
8PV3|1|C1|C|201
8PV3|1|C1|C|202
*
8PV3|1|C1|G|206
8PV3|1|C1|A|207
8PV3|1|C1|G|208
*
8PV3|1|C1|C|220
8PV3|1|C1|G|221
8PV3|1|C1|U|222
8PV3|1|C1|A|223
8PV3|1|C1|U|224
8PV3|1|C1|A|225

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein