J4_8PV8_002

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

UGAG*CGCC*GAG*CGUAUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV8|1|C1|U|180
8PV8|1|C1|G|181
8PV8|1|C1|A|182
8PV8|1|C1|G|183
*
8PV8|1|C1|C|199
8PV8|1|C1|G|200
8PV8|1|C1|C|201
8PV8|1|C1|C|202
*
8PV8|1|C1|G|206
8PV8|1|C1|A|207
8PV8|1|C1|G|208
*
8PV8|1|C1|C|220
8PV8|1|C1|G|221
8PV8|1|C1|U|222
8PV8|1|C1|A|223
8PV8|1|C1|U|224
8PV8|1|C1|A|225

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein