J4_8PVA_005
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8PVA|1|Z|U|8, 8PVA|1|Z|U|47, 8PVA|1|Z|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PVA_005 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.2232
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8PVA|1|Z|G|7
8PVA|1|Z|U|8
8PVA|1|Z|G|9
8PVA|1|Z|G|10
*
8PVA|1|Z|C|25
8PVA|1|Z|G|26
8PVA|1|Z|U|27
*
8PVA|1|Z|A|43
8PVA|1|Z|A|44
8PVA|1|Z|G|45
8PVA|1|Z|G|46
8PVA|1|Z|U|47
8PVA|1|Z|C|48
8PVA|1|Z|G|49
*
8PVA|1|Z|C|65
8PVA|1|Z|C|66
Current chains
- Chain Z
- P-site tRNA-fMet
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
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