J4_8PVA_007

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PVA_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.054

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8PVA|1|a|G|297
8PVA|1|a|G|298
8PVA|1|a|A|299
8PVA|1|a|A|300
8PVA|1|a|G|301
*
8PVA|1|a|C|316
8PVA|1|a|G|317
8PVA|1|a|C|318
8PVA|1|a|G|319
*
8PVA|1|a|C|323
8PVA|1|a|A|324
8PVA|1|a|G|325
*
8PVA|1|a|C|337
8PVA|1|a|G|338
8PVA|1|a|U|339
8PVA|1|a|A|340
8PVA|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24