J4_8PVK_008

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUAA*UC*GCU*AUGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVK|1|C1|G|2967
8PVK|1|C1|U|2968
8PVK|1|C1|A|2969
8PVK|1|C1|A|2970
*
8PVK|1|C1|U|3000
8PVK|1|C1|C|3001
*
8PVK|1|C1|G|3056
8PVK|1|C1|C|3057
8PVK|1|C1|U|3058
*
8PVK|1|C1|A|3092
8PVK|1|C1|U|3093
8PVK|1|C1|G|3094
8PVK|1|C1|C|3095

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LV

60S ribosomal protein l23-like protein